PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00480g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 223aa    MW: 23266.3 Da    PI: 9.6382
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00480g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.2e-102752227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              kt+lC+ +     Ck+Gd+C+FaHg+
  Peaxi162Scf00480g00011.1 27 KTKLCNKYNTAEGCKFGDKCNFAHGE 52
                              8***********************96 PP

2zf-CCCH34.63.2e-11190214126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC +f + G C +GdrC+FaHg
  Peaxi162Scf00480g00011.1 190 KKTKLCENFTK-GSCTFGDRCHFAHG 214
                               59*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-132355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-82455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9292553IPR000571Zinc finger, CCCH-type
SMARTSM003560.00142552IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-72752IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.65E-1591167IPR004088K Homology domain, type 1
SMARTSM003225.5E-1295165IPR004087K Homology domain
PROSITE profilePS5008414.3296160IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-1596166IPR004088K Homology domain, type 1
CDDcd001054.60E-1398160No hitNo description
PfamPF000132.4E-1098162IPR004088K Homology domain, type 1
SuperFamilySSF902299.29E-9187219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-15188220IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-7189215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314189216IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9190214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMNSAHAPSF RNAGAPSFSN GNTPAVKTKL CNKYNTAEGC KFGDKCNFAH GEWEIGKPIV  60
PSQEDPRAMG AGPMPGRYGG RMETAVSGPA ASFGTSATAK ISVDASLAGP IIGKGGVNSK  120
QIIRQTGAKL AIRDHETDPN LRNIELEGTF EQISQASAMV RELINNLGPV GGPGRTHAIP  180
GGAAPQVSNK KTKLCENFTK GSCTFGDRCH FAHGAGELRK TGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767111.11e-138PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-80C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLK4D2B71e-130K4D2B7_SOLLC; Uncharacterized protein
STRINGSolyc10g078750.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-63C3H family protein